Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs7040774 chr9:97155253 A/T 8.26E-5 118 41.77 42.73 17.03 KM Plot
THYM rs7041219 chr9:97216850 G/A 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs7042219 chr9:97247686 G/A 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs7042434 chr9:97254997 T/G 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs7042468 chr9:97255083 T/C 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs7045712 chr9:97208317 T/C 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs7046779 chr9:97210892 C/T 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs7079111 chr10:90750982 T/G 1.72E-12 114 6 49.87 38.83 KM Plot
THYM rs7094952 chr10:13976810 C/T 0.000296 119 48 35 12.87 KM Plot
THYM rs7101556 chr11:16503466 G/A 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs7103496 chr11:2729937 C/T 0 118 38.83 58.7 2.9 KM Plot
THYM rs7106761 chr11:45756960 G/T 8.07E-7 119 28.43 23.7 49.6 KM Plot
THYM rs7109782 chr11:125587193 T/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs71115382 chr14:50064377 CT/CTTT 2.8E-5 114 44.38 38.33 9.63 KM Plot
THYM rs71156436 chr16:24788422 AGCAGCCACAGCC/A 3.17E-6 119 46.6 28 31.37 KM Plot